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Bioinformatics Advances|June 26, 2023
PPIntegrator: semantic integrative system for protein-protein interaction and application for host-pathogen datasetsYasmmin Côrtes Martins, Artur Ziviani, Maiana de Oliveira Cerqueira E Costa, et al.Bioinformatics Advances|June 26, 2023
Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling processRecep Adiyaman, Nicholas S Edmunds, Ahmet G Genc, et al.Bioinformatics Advances|June 26, 2023
SPECK: an unsupervised learning approach for cell surface receptor abundance estimation for single-cell RNA-sequencing dataAzka Javaid, H Robert FrostBioinformatics Advances|June 23, 2023
tidytof: a user-friendly framework for scalable and reproducible high-dimensional cytometry data analysisTimothy J Keyes, Abhishek Koladiya, Yu-Chen Lo, et al.Bioinformatics Advances|June 23, 2023
PIQLE: protein-protein interface quality estimation by deep graph learning of multimeric interaction geometriesMd Hossain Shuvo, Mohimenul Karim, Rahmatullah Roche, et al.Bioinformatics Advances|June 26, 2023
Nightingale: web components for protein feature visualizationGustavo A Salazar, Aurélien Luciani, Xavier Watkins, et al.Bioinformatics Advances|December 13, 2021
pdCSM-GPCR: predicting potent GPCR ligands with graph-based signaturesJoão Paulo L Velloso, David B Ascher, Douglas E V PiresBioinformatics Advances|September 3, 2025
DgeaHeatmap: an R package for transcriptomic analysis and heatmap generationLeonie J Lancelle, Phani S Potru, Björn Spittau, et al.Bioinformatics Advances|August 28, 2025
An explainable machine learning pipeline for prediction of antimicrobial resistance in Pseudomonas aeruginosaAakriti Jain, Govinda Rao Dabburu, Bishal Samanta, et al.Bioinformatics Advances|August 28, 2025
Harmonizing heterogeneous single-cell gene expression data with individual-level covariate informationYudi Mu, Wei Vivian LiPageof 114