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Bioinformatics Advances|May 12, 2025
PPIFold: a tool for analysis of protein-protein interaction from AlphaPullDownQuentin Rouger, Emmanuel Giudice, Damien F Meyer, et al.
Bioinformatics Advances|April 29, 2025
Enhanced metabolomic predictions using concept drift analysis: identification and correction of confounding factorsJana Schwarzerova, Dominika Olesova, Katerina Jureckova, et al.
Bioinformatics Advances|April 24, 2025
HORNET: tools to find genes with causal evidence and their regulatory networks using eQTLsNoah Lorincz-Comi, Yihe Yang, Jayakrishnan Ajayakumar, et al.
Bioinformatics Advances|April 29, 2025
Inferring differential protein binding from time-series chromatin accessibility dataSneha Mitra, Alexander J Hartemink
Bioinformatics Advances|April 24, 2025
TITINdb2-expanding annotation and structural information for protein variants in the giant sarcomeric protein titinTimir Weston, Joseph Ng, Oriol Gracia Carmona, et al.
Bioinformatics Advances|March 31, 2025
Pandora: a tool to estimate dimensionality reduction stability of genotype dataJulia Haag, Alexander I Jordan, Alexandros Stamatakis
Bioinformatics Advances|April 2, 2025
AntiFold: improved structure-based antibody design using inverse foldingMagnus Haraldson Høie, Alissa M Hummer, Tobias H Olsen, et al.
Bioinformatics Advances|April 3, 2025
Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomesKathryn Kananen, Iva Veseli, Christian J Quiles Pérez, et al.
Bioinformatics Advances|April 3, 2025
RNApysoforms: fast rendering interactive visualization of RNA isoform structure and expression in PythonBernardo Aguzzoli Heberle, Madeline L Page, Emil K Gustavsson, et al.
Bioinformatics Advances|April 22, 2025
NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulationSaniya Khullar, Xiang Huang, Raghu Ramesh, et al.
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