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Bioinformatics Advances|April 21, 2025
pastboon: an R package to simulate parameterized stochastic Boolean networksMohammad Taheri-Ledari, Sayed-Amir Marashi, Kaveh Kavousi
Bioinformatics Advances|April 9, 2025
BADGER: biologically-aware interpretable differential gene expression ranking modelHajung Kim, Mogan Gim, Seungheun Baek, et al.
Bioinformatics Advances|March 20, 2025
Isopeptor: a tool for detecting intramolecular isopeptide bonds in protein structuresFrancesco Costa, Rob Barringer, Ioannis Riziotis, et al.
Bioinformatics Advances|March 17, 2025
Masked language modeling pretraining dynamics for downstream peptide: T-cell receptor binding predictionBrock Landry, Jian Zhang
Bioinformatics Advances|March 10, 2025
A comprehensive bioinformatic evaluation of the NTRK family's potential as prognostic biomarkers in breast cancerRamtin Mohammadi, Mohsen Ghiasi, Saber Mehdizadeh, et al.
Bioinformatics Advances|March 4, 2025
arcMS: transformation of multi-dimensional high-resolution mass spectrometry data to columnar format for compact storage and fast accessJulien Le Roux, Julien Sade
Bioinformatics Advances|March 26, 2025
wQFM-TREE: highly accurate and scalable quartet-based species tree inference from gene treesAbdur Rafi, Ahmed Mahir Sultan Rumi, Sheikh Azizul Hakim, et al.
Bioinformatics Advances|May 29, 2024
WGCCRR: a web-based tool for genome-wide screening of convergent indels and substitutions of amino acidsZheng Dong, Chen Wang, Qingming Qu
Bioinformatics Advances|May 29, 2024
Assessing the validity of driver gene identification tools for targeted genome sequencing dataFelipe Rojas-Rodriguez, Marjanka K Schmidt, Sander Canisius
Bioinformatics Advances|June 3, 2024
The axes of biology: a novel axes-based network embedding paradigm to decipher the functional mechanisms of the cellSergio Doria-Belenguer, Alexandros Xenos, Gaia Ceddia, et al.
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