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Bioinformatics Advances|May 2, 2023
PGPointNovo: an efficient neural network-based tool for parallel de novo peptide sequencingXiaofang Xu, Chunde Yang, Qiang He, et al.Bioinformatics Advances|May 25, 2023
A self-knowledge distillation-driven CNN-LSTM model for predicting disease outcomes using longitudinal microbiome dataDaryl L X Fung, Xu Li, Carson K Leung, et al.Bioinformatics Advances|June 9, 2025
Phenotype driven data augmentation methods for transcriptomic dataNikita Janakarajan, Mara Graziani, María Rodríguez MartínezBioinformatics Advances|June 9, 2025
BonoboFlow: viral genome assembly and haplotype reconstruction from nanopore readsChristian Ndekezi, Drake Byamukama, Frank Kato, et al.Bioinformatics Advances|June 20, 2025
NRGSuite-Qt: a PyMOL plugin for high-throughput virtual screening, molecular docking, normal-mode analysis, the study of molecular interactions, and the detection of binding-site similaritiesGabriel Tiago Galdino, Thomas DesCôteaux, Natalia Teruel, et al.Bioinformatics Advances|July 21, 2025
MitSorter: a standalone tool for accurate discrimination of mtDNA and NuMT ONT reads based on differential methylationSharon Natasha Cox, Angelo Sante Varvara, Graziano PesoleBioinformatics Advances|July 14, 2025
Using pseudotime derivative on single-cell RNA sequencing data to identify genes undergoing cell cycle regulationYohan Lefol, Geir Amund Svan Hasle, Siv Anita Hegre, et al.Bioinformatics Advances|June 10, 2025
SynDRep: a synergistic partner prediction tool based on knowledge graph for drug repurposingKarim S Shalaby, Sathvik Guru Rao, Bruce Schultz, et al.Bioinformatics Advances|June 4, 2025
Energy metric prediction for double insertion mutants via the RoseNet deep learning frameworkSarah Coffland, Katie Christensen, Brian Hutchinson, et al.Bioinformatics Advances|October 1, 2025
DeepEPI: CNN-transformer-based model for extracting TF interactions through predicting enhancer-promoter interactionsSeyedeh Fatemeh Tabatabaei, Saeedeh Akbari Roknabadi, Somayyeh KoohiPageof 115