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Bioinformatics Advances|August 13, 2025
Estimating protein complex model accuracy using graph transformers and pairwise similarity graphsJian Liu, Pawan Neupane, Jianlin Cheng
Bioinformatics Advances|August 13, 2025
robin2: accelerating single-cell data clustering evaluationValeria Policastro, Dario Righelli, Luisa Cutillo, et al.
Bioinformatics Advances|September 8, 2025
MBC PathNet: integration and visualization of networks connecting functionally related pathways predicted from transcriptomic and proteomic datasetsJens Hansen, Ravi Iyengar
Bioinformatics Advances|September 22, 2025
Exploration of chaos game representation and integrative deep learning approaches for whole-genome sequencing-based grapevine genetic testingAndrew Vu, Brendan Park, Yifeng Li, et al.
Bioinformatics Advances|September 22, 2025
MADVAR: a lightweight, data-driven tool for automated feature selection in omics dataGilad Silberberg
Bioinformatics Advances|October 13, 2025
FBAT DAP-G: fine-mapping of genetic associations in family-based studies using the Deterministic Approximation of Posteriors algorithmJulian Hecker, Dmitry Prokopenko, Sanghun Lee, et al.
Bioinformatics Advances|October 15, 2025
Competencies for bioinformatics core facility scientists: extension of the ISCB competency framework for bioinformaticsMarta Lloret-Llinares, Patricia Carvajal-López, Tim Downing, et al.
Bioinformatics Advances|August 1, 2025
IsoPrimer: a pipeline for designing isoform-aware primer pairs for comprehensive gene expression quantificationErmes Filomena, Ernesto Picardi, Graziano Pesole, et al.
Bioinformatics Advances|August 5, 2025
pgxRpi: an R/bioconductor package for user-friendly access to the Beacon v2 APIHangjia Zhao, Michael Baudis
Bioinformatics Advances|July 28, 2025
Genome Evaluation Pipeline (GEP): a fully automated quality control tool for parallel evaluation of genome assembliesJames Sullivan, Diego De Panis, Valentina Galeone, et al.
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