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Bioinformatics Advances|March 5, 2025
SpaFlow: a Nextflow pipeline for QC and clustering of MxIF datasetsBrenna C Novotny, Raymond Moore, Lynn Langit, et al.
Bioinformatics Advances|December 19, 2024
KTED: a comprehensive web-based database for transposable elements in the Korean genomeJin-Ok Lee, Sejoon Lee, Dongyoon Lee, et al.
Bioinformatics Advances|December 16, 2024
The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and trainingCath Brooksbank, Michelle D Brazas, Nicola Mulder, et al.
Bioinformatics Advances|December 16, 2024
epiTCR-KDA: knowledge distillation model on dihedral angles for TCR-peptide predictionMy-Diem Nguyen Pham, Chinh Tran-To Su, Thanh-Nhan Nguyen, et al.
Bioinformatics Advances|December 16, 2024
Optimizing design of genomics studies for clonal evolution analysisArjun Srivatsa, Russell Schwartz
Bioinformatics Advances|December 12, 2024
wQFM-DISCO: DISCO-enabled wQFM improves phylogenomic analyses despite the presence of paralogsSheikh Azizul Hakim, Md Rownok Zahan Ratul, Md Shamsuzzoha Bayzid
Bioinformatics Advances|November 19, 2024
Using deep learning and large protein language models to predict protein-membrane interfaces of peripheral membrane proteinsDimitra Paranou, Alexios Chatzigoulas, Zoe Cournia
Bioinformatics Advances|November 21, 2024
MultiOmicsIntegrator: a nextflow pipeline for integrated omics analysesBianka Alexandra Pasat, Eleftherios Pilalis, Katarzyna Mnich, et al.
Bioinformatics Advances|November 18, 2024
mxfda: a comprehensive toolkit for functional data analysis of single-cell spatial dataJulia Wrobel, Alex C Soupir, Mitchell T Hayes, et al.
Bioinformatics Advances|November 21, 2024
Exon nomenclature and classification of transcripts database (ENACTdb): a resource for analyzing alternative splicing mediated proteome diversityParas Verma, Deeksha Thakur, Shashi B Pandit
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