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Briefings in Bioinformatics|May 27, 2026
The impact of transcriptome assembly algorithms on downstream quantification in RNA-seq data analysisZeming Tan, Jiahao Li, Enfeng Qi, et al.Briefings in Bioinformatics|May 27, 2026
Nonlinear kernel-based high-dimensional inference for set-based genetic association studiesZechen Zhang, Hui Yang, Meilin Zhu, et al.Briefings in Bioinformatics|May 27, 2026
Inferring tumor absolute copy number and clonal substructure from single-cell chromatin accessibilityYing Wang, Yuhao Deng, Hang Li, et al.Briefings in Bioinformatics|May 27, 2026
PVAED: prior-guided variational autoencoders with diffusion denoising for interpretable single-cell representation learningYawei Niu, Yichu Chen, Wenji MaBriefings in Bioinformatics|June 4, 2026
Identification and characterization of lncRNA-stemness-immune regulatory patternsZhipeng Qian, Jiaqi Yin, Chunlong Zhang, et al.Briefings in Bioinformatics|June 4, 2026
APAdeg enhances differentially expressed gene inference by leveraging site-specific signals in APA-seq dataBandhan Sarker, Tianjiao Zhou, Xiaoling Deng, et al.Briefings in Bioinformatics|June 5, 2026
Benchmarking TCR-pMHC structure prediction: a unified evaluation and CDR3-based functional insightsJiadong Lu, Xinyuan Zhu, Xinting Hu, et al.Briefings in Bioinformatics|August 9, 2022
R5hmCFDV: computational identification of RNA 5-hydroxymethylcytosine based on deep feature fusion and deep votingHongyan Shi, Shengli Zhang, Xinjie LiBriefings in Bioinformatics|June 14, 2026
Reflections on the use of LLMs for cell annotationPartha Pratim RayBriefings in Bioinformatics|June 14, 2026
A unified framework for selecting and evaluating cell-type-specific gene co-expressions in single-cell dataXinning Shan, Yingxin Lin, Hongyu ZhaoPageof 555