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Briefings in Bioinformatics|March 26, 2026
Large language model agents for biological intelligence across genomics, proteomics, spatial biology, and biomedicineSajib Acharjee Dip, Dipanwita Mallick, Uddip Acharjee Shuvo, et al.
Briefings in Bioinformatics|March 30, 2026
CrisprPr: a hybrid-driven framework for CRISPR/Cas9 off-target prediction with analysis of prior-information updatesYingfu Wu, Yang Qi, Yiqi Chen, et al.
Briefings in Bioinformatics|April 15, 2026
DuaST: an integrated deep learning framework for spatial transcriptomics with cross-branch interactionXiao Liang, Pei Liu, Juping Li, et al.
Briefings in Bioinformatics|April 15, 2026
The good, the bad, and the ugly: opportunities, challenges, and pitfalls in spatial proteomics modelingShahil Yasar Haque, Swakkhar Shatabda, Salekul Islam, et al.
Briefings in Bioinformatics|April 15, 2026
MELGene: knowledge-enhanced multimodel ensemble learning for disease-gene association predictionHaoyu Tian, Kuo Yang, Zeyu Liu, et al.
Briefings in Bioinformatics|April 14, 2026
BCRInsight: an antibody language model to decode biological signals from BCR sequencesHailong Zhao, Shang Lou, Xuhua Li, et al.
Briefings in Bioinformatics|August 19, 2026
DeepKOALA: a scalable deep learning framework for KEGG Orthology assignmentZhaoxi Yu, Lingjie Meng, Canh Hao Nguyen, et al.
Briefings in Bioinformatics|August 19, 2026
Foundation models in omics research: a comprehensive surveyHaozhe Liu, Wenhao Cai, Yizheng Sun, et al.
Briefings in Bioinformatics|August 19, 2026
Unraveling cell-cell communication through spatial transcriptomics: a review of computational methodsJing Yang, Yu Shyr, Qi Liu
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