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Briefings in Bioinformatics|January 3, 2025
kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomesGiuseppe Defazio, Marco Antonio Tangaro, Graziano Pesole, et al.
Briefings in Bioinformatics|January 3, 2025
Online-adjusted evolutionary biclustering algorithm to identify significant modules in gene expression dataRaúl Galindo-Hernández, Katya Rodríguez-Vázquez, Edgardo Galán-Vásquez, et al.
Briefings in Bioinformatics|March 25, 2025
deepTAD: an approach for identifying topologically associated domains based on convolutional neural network and transformer modelXiaoyan Wang, Junwei Luo, Lili Wu, et al.
Briefings in Bioinformatics|March 26, 2025
Elementary methods provide more replicable results in microbial differential abundance analysisJuho Pelto, Kari Auranen, Janne V Kujala, et al.
Briefings in Bioinformatics|March 23, 2025
BAMBI integrates biostatistical and artificial intelligence methods to improve RNA biomarker discoveryPeng Zhou, Zixiu Li, Feifan Liu, et al.
Briefings in Bioinformatics|March 11, 2025
GEMDiff: a diffusion workflow bridges between normal and tumor gene expression states: a breast cancer case studyXusheng Ai, Melissa C Smith, F Alex Feltus
Briefings in Bioinformatics|March 12, 2025
Optimizing sample size for supervised machine learning with bulk transcriptomic sequencing: a learning curve approachYunhui Qi, Xinyi Wang, Li-Xuan Qin
Briefings in Bioinformatics|March 7, 2025
MAEST: accurately spatial domain detection in spatial transcriptomics with graph masked autoencoderPengfei Zhu, Han Shu, Yongtian Wang, et al.
Briefings in Bioinformatics|March 7, 2025
Unveiling a novel cancer hallmark by evaluation of neural infiltration in cancerQi Dong, Yingying Guo, Chen Lv, et al.
Briefings in Bioinformatics|March 13, 2025
DRAG: design RNAs as hierarchical graphs with reinforcement learningYichong Li, Xiaoyong Pan, Hongbin Shen, et al.
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