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Briefings in Bioinformatics|February 6, 2025
Benchmarking 13 tools for mutational signature attribution, including a new and improved algorithmNanhai Jiang, Yang Wu, Steven G RozenBriefings in Bioinformatics|August 29, 2024
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility dataJens Uwe Loers, Vanessa VermeirssenBriefings in Bioinformatics|August 29, 2024
Detecting microsatellite instability by length comparison of microsatellites in the 3' untranslated region with RNA-seqJin-Wook Choi, Jin-Ok Lee, Sejoon LeeBriefings in Bioinformatics|July 31, 2024
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq dataYang Li, Anjun Ma, Yizhong Wang, et al.Briefings in Bioinformatics|July 31, 2024
Solving genomic puzzles: computational methods for metagenomic binningVijini Mallawaarachchi, Anuradha Wickramarachchi, Hansheng Xue, et al.Briefings in Bioinformatics|June 27, 2024
Optimizing in silico drug discovery: simulation of connected differential expression signatures and applications to benchmarkingCatalina Gonzalez Gomez, Manuel Rosa-Calatrava, Julien FouretBriefings in Bioinformatics|June 27, 2024
Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repairBijia Chen, Chao Ren, Zhangyi Ouyang, et al.Briefings in Bioinformatics|June 28, 2024
ifDEEPre: large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbersQingxiong Tan, Jin Xiao, Jiayang Chen, et al.Briefings in Bioinformatics|June 27, 2024
scPLAN: a hierarchical computational framework for single transcriptomics data annotation, integration and cell-type label refinementQirui Guo, Musu Yuan, Lei Zhang, et al.Briefings in Bioinformatics|June 26, 2024
Hierarchical multimodal self-attention-based graph neural network for DTI predictionJilong Bian, Hao Lu, Guanghui Dong, et al.Pageof 541