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Briefings in Bioinformatics|January 13, 2026
CircRM: profiling circular RNA modifications from nanopore direct RNA sequencingJiayi Li, Shenglun Chen, Zhixing Wu, et al.Briefings in Bioinformatics|January 11, 2026
GRAFT: a graph-aware fusion transformer for cancer driver gene predictionSang-Pil Cho, Young-Rae ChoBriefings in Bioinformatics|January 13, 2026
Enhancing TFEA.ChIP with ENCODE regulatory maps for generalizable transcription factor enrichmentYosra Berrouayel, Luis Del PesoBriefings in Bioinformatics|November 12, 2025
DSCC: disease subtyping using spectral clustering and community detection from consensus networksDao Tran, Van-Dung Pham, Ha Nguyen, et al.Briefings in Bioinformatics|November 12, 2025
M3Site: multiclass multimodal learning for protein active site identification and classificationSong Ouyang, Yong Luo, Huiyu Cai, et al.Briefings in Bioinformatics|November 21, 2025
Evaluation of single-template ligand-based methods for the discovery of small-molecule nucleic acid bindersDávid Bajusz, Anita Rácz, Janusz M Bujnicki, et al.Briefings in Bioinformatics|November 20, 2025
SciSt: single-cell reference-informed spatial gene expression prediction from pathological imagesYixin Li, Fan Zhong, Lei LiuBriefings in Bioinformatics|November 15, 2025
CluVar: clustering of variants using autoencoder for inferring cancer subclones from single cell RNA sequencing dataChae Won Kim, Heewon Park, Dohyeon Kim, et al.Briefings in Bioinformatics|November 14, 2025
DeepPlantAllergy: deep learning for explainable prediction of allergenicity in plant proteinsWala Dhouib, Fakher Frikha, Ahmed Rebai, et al.Briefings in Bioinformatics|January 7, 2026
A novel two-sample Mendelian randomization framework integrating common and rare variants: application to assess the effect of HDL-C on preeclampsia riskYu Zhang, Ming Li, David M Haas, et al.Pageof 555