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Briefings in Bioinformatics|June 30, 2025
An order-preserving batch-effect correction method based on a monotonic deep learning frameworkMingxuan Zhang, Yinglei LaiBriefings in Bioinformatics|July 7, 2025
Gene regulatory network integration with multi-omics data enhances survival predictions in cancerRomana T Pop, Ping-Han Hsieh, Tatiana Belova, et al.Briefings in Bioinformatics|July 7, 2025
Advancing edge-based clustering and graph embedding for biological network analysis: a case study in RASopathiesFederico García-Criado, Pedro Seoane, Elena Rojano, et al.Briefings in Bioinformatics|July 9, 2025
Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq dataYiyou Song, Bowen Song, Daiyun Huang, et al.Briefings in Bioinformatics|July 6, 2025
Spatial histology and gene-expression representation and generative learning via online self-distillation contrastive learningQianyi Yan, Xuan Li, Jiangnan Cui, et al.Briefings in Bioinformatics|July 16, 2025
Paradigms, innovations, and biological applications of RNA velocity: a comprehensive reviewYajunzi Wang, Jing Li, Haoruo Zha, et al.Briefings in Bioinformatics|July 8, 2025
DrugProtAI: A machine learning-driven approach for predicting protein druggability through feature engineering and robust partition-based ensemble methodsAnkit Halder, Sabyasachi Samantaray, Sahil Barbade, et al.Briefings in Bioinformatics|September 18, 2025
Computational refinement and multivalent engineering of complementarity-determining region-grafted nanobodies on a humanized scaffold for retaining antiviral efficacyLiyun Huo, Qin Qin, Tian Tian, et al.Briefings in Bioinformatics|September 22, 2025
scHSC: enhancing single-cell RNA-seq clustering via hard sample contrastive learningSheng Fang, Xiaokang Yu, Xinyi Xu, et al.Briefings in Bioinformatics|September 22, 2025
A survey on deep learning for drug-target binding prediction: models, benchmarks, evaluation, and case studiesKusal Debnath, Pratip Rana, Preetam GhoshPageof 555