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Briefings in Bioinformatics|October 26, 2025
BioLLMNet: enhancing RNA-interaction prediction with a specialized cross-LLM transformation networkAbrar Rahman Abir, Md Toki Tahmid, Md Shamsuzzoha Bayzid
Briefings in Bioinformatics|October 27, 2025
scVGAMF: a novel imputation method for scRNA-seq data by integrating linear and non-linear featuresZhiyuan Zhou, Wei Zhang, Xiaoying Zheng, et al.
Briefings in Bioinformatics|October 9, 2025
Quantifying antibiotic resistome risks across environmental niches: the L-ARRAP for long-read metagenomic profilingYongxin Li, Yue Gao, Xiaohui Liu, et al.
Briefings in Bioinformatics|October 13, 2025
Microllm: a structured information extraction tool using large language models and named entity recognition in microbiologyJing Lu, Fei Li, Lei Feng, et al.
Briefings in Bioinformatics|October 9, 2025
Heterogeneous graph contrastive learning for integration and alignment of spatial transcriptomics dataYang Gui, Zhaorui Tan, Yan Xu, et al.
Briefings in Bioinformatics|October 9, 2025
scHDeepInsight: a hierarchical deep learning framework for precise immune cell annotation in single-cell RNA-seq dataShangru Jia, Artem Lysenko, Keith A Boroevich, et al.
Briefings in Bioinformatics|October 17, 2025
Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell dataRuitong Li, Jean-Baptiste Alberge, Tina Keshavarzian, et al.
Briefings in Bioinformatics|October 17, 2025
Enhancing cross-domain protein and peptide interaction with retrained deep learning modelsXin Cao, Jingquan Li, Fanpeng Meng, et al.
Briefings in Bioinformatics|October 1, 2025
SurvBoard: standardized benchmarking for multi-omics cancer survival modelsDavid Wissel, Nikita Janakarajan, Aayush Grover, et al.
Briefings in Bioinformatics|October 6, 2025
Navigating the 3D genome at single-cell resolution: techniques, computation, and mechanistic landscapesFeitong Hong, Kaiyuan Han, Yuduo Hao, et al.
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