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Briefings in Bioinformatics|September 8, 2025
Predicting nucleic acid binding sites by attention map-guided graph convolutional network with protein language embeddings and physicochemical informationXiang Li, Wei Peng, Xiaolei Zhu
Briefings in Bioinformatics|August 18, 2025
Protein language model pseudolikelihoods capture features of in vivo B cell selection and evolutionDaphne van Ginneken, Anamay Samant, Karlis Daga-Krumins, et al.
Briefings in Bioinformatics|August 12, 2025
Decoding longitudinal microbiome trajectories: an interpretable machine learning approach for biomarker discovery and predictionYifan Dai, Yunzhi Qian, Yixiang Qu, et al.
Briefings in Bioinformatics|February 16, 2026
Imputing missing values in single-cell RNA-sequencing data: a statistical and machine learning-based approachA F M Shamsuzzaman, Sumanta Ray, Anirban Mukhopadhyay
Briefings in Bioinformatics|February 16, 2026
EPINTLM: enhancer-promoter prediction with pretrained k-mer embeddings and residual cross-attentionThi Lan Nguyen, Hien Quang Kha, Phat Ky Nguyen, et al.
Briefings in Bioinformatics|February 17, 2026
SHEST: single-cell-level artificial intelligence from haematoxylin and eosin morphology for cell-type prediction and spatial transcriptomics reconstructionHoyeon Jeong, Junghan Oh, Donggeon Lee, et al.
Briefings in Bioinformatics|February 16, 2026
Current status of human endogenous retrovirus annotationSergei Sinitsyn, Marharyta Klianitskaya, Michelle Vincendeau, et al.
Briefings in Bioinformatics|February 12, 2026
Pathways, outputs and impact of NIH-supported bioinformatics and genomics graduate trainees in AfricaDaudi Jjingo, Andrew Walakira, Suhaila Hashim, et al.
Briefings in Bioinformatics|February 12, 2026
GATCL: graph attention network meets contrastive learning for spatial domain identificationJichong Mu, Yachen Yao, Qiuhao Chen, et al.
Briefings in Bioinformatics|November 16, 2022
Ensembles of knowledge graph embedding models improve predictions for drug discoveryDaniel Rivas-Barragan, Daniel Domingo-Fernández, Yojana Gadiya, et al.
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