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Briefings in Bioinformatics|June 19, 2025
A novel deep learning framework with dynamic tokenization for identifying chromatin interactions along with motif importance investigationLiangcan Li, Xin Li, Hao Wu
Briefings in Bioinformatics|June 19, 2025
Advances and challenges in cell-cell communication inference: a comprehensive review of tools, resources, and future directionsGiulia Cesaro, James Shiniti Nagai, Nicolò Gnoato, et al.
Briefings in Bioinformatics|June 17, 2025
2OM-Pred: prediction of 2-O-methylation sites in ribonucleic acid using diverse classifiersAnas Bilal, Muhammad Taseer Suleman, Khalid Almohammadi, et al.
Briefings in Bioinformatics|October 10, 2025
MODA: a graph convolutional network-based multi-omics integration framework for unraveling hub molecules and disease mechanismsJinhui Zhao, Yanyan Zhou, Han Bao, et al.
Briefings in Bioinformatics|October 10, 2025
Novel methods for temporally varying gene identification in longitudinal studies reveal bleeding and clotting pathway activation caused by blood drawsWei Chen, Yi Chai, Qi Jiang, et al.
Briefings in Bioinformatics|November 3, 2025
TaxaGO: a novel, phylogenetically informed gene ontology enrichment analysis toolEleftherios Bochalis, Antonios Papageorgiou, George Lagoumintzis, et al.
Briefings in Bioinformatics|November 3, 2025
Joint similarity nonnegative matrix factorization model for identification of recurrence-related association patterns in tumorJin Deng, Junjie Lan, Ruolan Du, et al.
Briefings in Bioinformatics|October 20, 2025
Read-level DNA methylation deconvolution enhances circulating tumor DNA detectionTing Qi, Lakshmi Narayanan Lakshmanan, Yuwei Yang, et al.
Briefings in Bioinformatics|October 20, 2025
A transcriptional plasticity-aware framework for RNA-seq differential expression analysisCheng Bei, Xiaoman Wang, Mingyu Gan, et al.
Briefings in Bioinformatics|October 20, 2025
SysML: adaptive recommendation system for heterogeneous biomedical data preprocessing and modeling workflowsJinhui Zhao, Xinjie Zhao, Chunxia Zhao, et al.
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