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Briefings in Bioinformatics|April 10, 2025
Comprehensive benchmarking of large language models for RNA secondary structure predictionLuciano I Zablocki, Leandro A Bugnon, Matias Gerard, et al.Briefings in Bioinformatics|April 15, 2025
Assessing the impact of batch effect associated missing values on downstream analysis in high-throughput biomedical dataHarvard Wai Hann Hui, Wei Xin Chan, Wilson Wen Bin GohBriefings in Bioinformatics|April 14, 2025
DeepHeteroCDA: circRNA-drug sensitivity associations prediction via multi-scale heterogeneous network and graph attention mechanismZhijian Huang, Kai Chen, Xiaojun Xiao, et al.Briefings in Bioinformatics|April 7, 2025
MRAgent: an LLM-based automated agent for causal knowledge discovery in disease via Mendelian randomizationWei Xu, Gang Luo, Weiyu Meng, et al.Briefings in Bioinformatics|April 7, 2025
Inter-view contrastive learning and miRNA fusion for lncRNA-protein interaction prediction in heterogeneous graphsYijun Mao, Jiale Wu, Jian Weng, et al.Briefings in Bioinformatics|May 26, 2025
GAEDGRN: reconstruction of gene regulatory networks based on gravity-inspired graph autoencodersPi-Jing Wei, Huai-Wan Jin, Zhen Gao, et al.Briefings in Bioinformatics|May 19, 2025
VirNucPro: an identifier for the identification of viral short sequences using six-frame translation and large language modelsJing Li, Jia Mi, Wei Lin, et al.Briefings in Bioinformatics|May 14, 2025
MMsurv: a multimodal multi-instance multi-cancer survival prediction model integrating pathological images, clinical information, and sequencing dataHailong Yang, Jia Wang, Wenyan Wang, et al.Briefings in Bioinformatics|May 15, 2025
MSFT-transformer: a multistage fusion tabular transformer for disease prediction using metagenomic dataNing Wang, Minghui Wu, Wenchao Gu, et al.Briefings in Bioinformatics|May 16, 2025
De-motif sampling: an approach to decompose hierarchical motifs with applications in T cell recognitionXinyi Tang, Ran LiuPageof 556