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Briefings in Bioinformatics|October 27, 2025
Expression graph network framework for biomarker discoveryYang Liu, Jason Huse, Kasthuri Kannan
Briefings in Bioinformatics|November 8, 2025
TMBclaw: tumor clone-aware graph learning improves immunotherapy response prediction across heterogeneous cohortsYixuan Wang, Tianyi Zhu, Xiaofeng Song, et al.
Briefings in Bioinformatics|November 8, 2025
BioWorkflow: Retrieving comprehensive bioinformatics workflows from publicationsYidan Wang, Jiayin Wang
Briefings in Bioinformatics|October 31, 2025
CRISPR-GATE: a one-stop repository and guide to computational resources for genome editing experimentationAsif Ali Vadakkethil, Sonali Panda, Aranya Mitra, et al.
Briefings in Bioinformatics|October 23, 2025
How far are we from the era of big data in transcriptomics? Lessons from the bacterial data in GEOA S Escobedo-Muñoz, Diego Carmona-Campos, Armando G G Trapaga, et al.
Briefings in Bioinformatics|October 6, 2025
Computational toxicology in drug discovery: applications of artificial intelligence in ADMET and toxicity predictionJiangyan Zhang, Haolin Li, Yuncong Zhang, et al.
Briefings in Bioinformatics|October 15, 2025
Integrative genetic analysis reveals new relationships between intraocular pressure, glaucoma, and ischemic stroke risk: a study based on combined SNP-to-gene, Mendelian randomization and pathway investigationsQi Zhang, Di Hu, Zenan Lin, et al.
Briefings in Bioinformatics|October 10, 2025
The promises and pitfalls of automated variant interpretation: a comprehensive reviewMireia Costa, Alberto García S, Ana León, et al.
Briefings in Bioinformatics|October 10, 2025
Spatial transcriptomic data denoising and domain identification by a community strength-augmented graph autoencoderKe Huang, Wenqian Tu, Lihua Zhang
Briefings in Bioinformatics|October 4, 2025
Denoising spatially resolved transcriptomics with consistency of heterogeneous spatial coordinates, transcription, and morphologyHaiyue Wang, Peng Gao, Shaoqing Feng, et al.
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