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Briefings in Bioinformatics|August 15, 2025
EXGEP: a framework for predicting genotype-by-environment interactions using ensembles of explainable machine-learning modelsTingxi Yu, Hao Zhang, Shoukun Chen, et al.
Briefings in Bioinformatics|August 15, 2025
RSCNN-PseU: random searching-based convolutional neural network model for identifying RNA pseudouridineJian Jin, Jie Feng
Briefings in Bioinformatics|September 29, 2025
Advancing ADMET prediction through multiscale fragment-aware pretraining with MSformer-ADMETHuihui Liu, Bingjie Zhu, Shuyang Nie, et al.
Briefings in Bioinformatics|September 22, 2025
VF-Fuse: a dual-path feature fusion and iterative update architecture for virulence factor predictionLiang Huang, Xiangyu Yu, Shumei Li, et al.
Briefings in Bioinformatics|August 12, 2025
DensePPI-2: a bio-inspired update for sequence-based PPI prediction leveraging mutation ratesTapas Chakraborty, Debarati Paul, Aanzil Akram Halsana, et al.
Briefings in Bioinformatics|August 12, 2025
BPA: a BERT-based priority annotation strategy for assessing the rationality of aquatic algal protein sequencesRui-Hua Huang, Jun-Ze Liang, Zheng-Hua Sun, et al.
Briefings in Bioinformatics|August 13, 2025
A survey on deep learning for polygenic risk scoresMax Schuran, Benjamin Goudey, Gillian S Dite, et al.
Briefings in Bioinformatics|August 12, 2025
Identifying novel therapeutic targets of natural compounds in traditional Chinese medicine herbs with hypergraph representation learningYantong Qiao, Lun Hu, Jun Zhang, et al.
Briefings in Bioinformatics|August 12, 2025
An advanced network pharmacology investigation of Shufeng Jiedu formula in the treatment for respiratory tract infection based on LC-MS, data mining, molecular docking, and molecular dynamic simulationYan Zhang, Huijun Wang, Chaochao Wang, et al.
Briefings in Bioinformatics|August 15, 2025
DeepGraphMut: a graph-based deep learning method for cancer prognosis using somatic mutation profileAswin Jose, Akansha Srivastava, Ariba Ansari, et al.
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