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Briefings in Bioinformatics|July 7, 2025
pMHChat, characterizing the interactions between major histocompatibility complex class II molecules and peptides with large language models and deep hypergraph learningJiani Ma, Zhikang Wang, Cen Tong, et al.Briefings in Bioinformatics|July 9, 2025
Deciphering the MHC immunopeptidome of human cancers with Ligand.MHC atlasZhi Ran, Meilin Mu, Shaofeng Lin, et al.Briefings in Bioinformatics|July 7, 2025
Intelligent Batch Epitope Identification and Partitioning: an intelligent tool for the identification of B cell dominant epitopesYun-Fei Ma, Ye LiuBriefings in Bioinformatics|July 7, 2025
Multi-level association rule mining and network pharmacology to identify the polypharmacological effects of herbal materials and compounds in traditional medicineHyejin Yu, Kwanyong Choi, Ji Yeon Kim, et al.Briefings in Bioinformatics|July 23, 2025
IMOP-Cancer: identifying mutation order pairs impacting cancer phenotypesYijing Zhang, Shaobo Kang, Renjie Dou, et al.Briefings in Bioinformatics|July 23, 2025
Path-MGCN: a pathway activity-based multi-view graph convolutional network for determining spatial domainsQirui Zhou, Chaowen Li, Chao Chen, et al.Briefings in Bioinformatics|July 25, 2025
GRANet: a graph residual attention network for gene regulatory network inferenceJunliang Zhou, Ningji Gong, Yanjun Hu, et al.Briefings in Bioinformatics|July 25, 2025
Bridging artificial intelligence and biological sciences: a comprehensive review of large language models in bioinformaticsAnqi Lin, Junpu Ye, Chang Qi, et al.Briefings in Bioinformatics|June 22, 2025
Fusion of spatiotemporal and network models to prioritize multiscale effects in single-cell perturbationsOsafu Augustine Egbon, John W Hickey, Benedict AnchangBriefings in Bioinformatics|June 30, 2025
Computational modeling of single-cell dynamics dataWenbo Guo, Zeyu Chen, Jin GuPageof 540