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Briefings in Bioinformatics|July 15, 2025
Kinase-inhibitor binding affinity prediction with pretrained graph encoder and language modelXudong Guo, Zixu Ran, Fuyi Li
Briefings in Bioinformatics|July 16, 2025
scRDAN: a robust domain adaptation network for cell type annotation across single-cell RNA sequencing dataYan Sun, Yan Zhao, Junliang Shang, et al.
Briefings in Bioinformatics|June 29, 2025
DeepExDC interprets genomic compartmentalization changes in single-cell Hi-C dataHongqiang Lyu, Pei Cao, Wenyao Long, et al.
Briefings in Bioinformatics|June 23, 2025
IECata: interpretable bilinear attention network and evidential deep learning improve the catalytic efficiency prediction of enzymesJingjing Wang, Yanpeng Zhao, Zhijiang Yang, et al.
Briefings in Bioinformatics|December 22, 2025
Probabilistic-graph-based spatial context-aware framework for interpretable spatial omics denoising and augmentationXianhan Qin, Chang Liu, Fei Gu, et al.
Briefings in Bioinformatics|December 17, 2025
scHLens: a web server for hierarchically and interactively exploring single cell RNA-seq dataJiazhi Xia, Zhiwei Deng, Chen He, et al.
Briefings in Bioinformatics|December 17, 2025
Prediction of liquid-liquid phase separation proteins based on protein language modelWenbin Li, Xusheng Deng, Chunlin Xiang, et al.
Briefings in Bioinformatics|December 15, 2025
Benchmarking large language models for cell typing in single-cell RNA-SeqTianxiang Xiao, Dezhi Hua, Yanan Wang, et al.
Briefings in Bioinformatics|December 26, 2025
TCRdesign: an antigen-specific generative language model for de novo design of T-cell receptorsXiaokun Li, Qiang Yang, Long Xu, et al.
Briefings in Bioinformatics|December 12, 2025
Identification of the body fluid donors from mixture stains using bulk transcriptomes dataHuan Yu, Jiayan Li, Jiaxin Ji, et al.
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