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Genome Biology|June 17, 2024
Beyond benchmarking and towards predictive models of dataset-specific single-cell RNA-seq pipeline performanceCindy Fang, Alina Selega, Kieran R Campbell
Genome Biology|June 12, 2024
Gene count normalization in single-cell imaging-based spatially resolved transcriptomicsLyla Atta, Kalen Clifton, Manjari Anant, et al.
Genome Biology|June 13, 2024
CpG island turnover events predict evolutionary changes in enhancer activityAcadia A Kocher, Emily V Dutrow, Severin Uebbing, et al.
Genome Biology|May 17, 2024
Comparative 3D genome analysis between neural retina and retinal pigment epithelium reveals differential cis-regulatory interactions at retinal disease lociEva D'haene, Víctor López-Soriano, Pedro Manuel Martínez-García, et al.
Genome Biology|August 25, 2023
Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristemXiangqian Zhu, Zhongping Xu, Guanying Wang, et al.
Genome Biology|August 23, 2023
Partial gene suppression improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethalJ Michael Krill-Burger, Joshua M Dempster, Ashir A Borah, et al.
Genome Biology|August 15, 2023
Predicting the impact of sequence motifs on gene regulation using single-cell dataJacob Hepkema, Nicholas Keone Lee, Benjamin J Stewart, et al.
Genome Biology|August 15, 2023
BamQuery: a proteogenomic tool to explore the immunopeptidome and prioritize actionable tumor antigensMaria Virginia Ruiz Cuevas, Marie-Pierre Hardy, Jean-David Larouche, et al.
Genome Biology|October 20, 2023
Dual spatially resolved transcriptomics for human host-pathogen colocalization studies in FFPE tissue sectionsHailey Sounart, Enikő Lázár, Yuvarani Masarapu, et al.
Genome Biology|October 5, 2023
GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variationBruno Contreras-Moreira, Shradha Saraf, Guy Naamati, et al.
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