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Genome Biology|May 13, 2024
A novel approach to exploring the dark genome and its application to mapping of the vertebrate virus fossil recordDaniel Blanco-Melo, Matthew A Campbell, Henan Zhu, et al.
Genome Biology|April 26, 2024
hadge: a comprehensive pipeline for donor deconvolution in single-cell studiesFabiola Curion, Xichen Wu, Lukas Heumos, et al.
Genome Biology|April 29, 2024
Disruption of metazoan gene regulatory networks in cancer alters the balance of co-expression between genes of unicellular and multicellular originsAnna S Trigos, Felicia Bongiovanni, Yangyi Zhang, et al.
Genome Biology|April 11, 2024
Scoary2: rapid association of phenotypic multi-omics data with microbial pan-genomesThomas Roder, Grégory Pimentel, Pascal Fuchsmann, et al.
Genome Biology|April 8, 2024
PMF-GRN: a variational inference approach to single-cell gene regulatory network inference using probabilistic matrix factorizationClaudia Skok Gibbs, Omar Mahmood, Richard Bonneau, et al.
Genome Biology|April 8, 2024
SuperCellCyto: enabling efficient analysis of large scale cytometry datasetsGivanna H Putri, George Howitt, Felix Marsh-Wakefield, et al.
Genome Biology|April 3, 2024
Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of PopulusYing-Lan Chen, Jo-Wei Allison Hsieh, Shang-Che Kuo, et al.
Genome Biology|October 16, 2023
MalariaSED: a deep learning framework to decipher the regulatory contributions of noncoding variants in malaria parasitesChengqi Wang, Yibo Dong, Chang Li, et al.
Genome Biology|October 31, 2023
MGA-seq: robust identification of extrachromosomal DNA and genetic variants using multiple genetic abnormality sequencingDa Lin, Yanyan Zou, Xinyu Li, et al.
Genome Biology|September 12, 2023
PhaseDancer: a novel targeted assembler of segmental duplications unravels the complexity of the human chromosome 2 fusion going from 48 to 46 chromosomes in hominin evolutionBarbara Poszewiecka, Krzysztof Gogolewski, Justyna A Karolak, et al.
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