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Microbiome|December 23, 2025
From metabolic fingerprints to field solutions: engineering the apple rhizosphere microbiome via host-directed Bacillus recruitment for sustainable apple replant disease controlWeitao Jiang, Ran Chen, Lefen Song, et al.Microbiome|December 16, 2025
Unraveling the interaction between the phageome and bacteriome in the rumen and its role in influencing metabolome dynamics in dairy cows at different lactation stagesMengya Wang, Chenguang Zhang, Lichao Zhao, et al.Microbiome|December 13, 2025
MCSPACE: inferring microbiome spatiotemporal dynamics from high-throughput co-localization dataGurdip Uppal, Guillaume Urtecho, Miles Richardson, et al.Microbiome|December 13, 2025
Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales orderMaria-Cecilia Chiriac, Paul Layoun, Clafy Fernandes, et al.Microbiome|December 13, 2025
Fetal programming by the parental microbiome of offspring behavior, and DNA methylation and gene expression within the hippocampusKevin L Gustafson, Susheel Bhanu Busi, Zachary L McAdams, et al.Microbiome|December 13, 2025
Carbohydrate competition by Enterobacteriaceae enhances colonization resistance to carbapenem-resistant hypervirulent K. pneumoniaeGong Li, Ling Jia, Jie Li, et al.Microbiome|December 12, 2025
Calcium-containing inorganic immunity booster drives the enrichment of specific root endophytic microbiota against Ralstonia solanacearumJingjing Bi, Buqing Wei, Enzhao Wang, et al.Microbiome|November 6, 2025
Phyllosphere microbes in foxtail millet primarily affect quality by modulating coloration and bitter compoundsQi Liu, Dongbing Hu, Yuxin Qiao, et al.Microbiome|October 29, 2025
High-resolution profiling of bacterial and fungal communities using pangenome-informed taxon-specific long-read ampliconsLuzia Stalder, Monika Maurhofer, Daniel CrollMicrobiome|November 4, 2025
Host clustering of Campylobacter species and enteric pathogens in a longitudinal cohort of infants, family members and livestock in rural Eastern EthiopiaZelalem Mekuria, Loic Deblais, Amanda Ojeda, et al.Pageof 237