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NAR Genomics and Bioinformatics|July 23, 2026
metaWEPP: leveraging biobank-scale intra-species phylogenies for near-haplotype resolution in metagenomic analysisPranav Gangwar, Qiwen Xu, Jaden Seangmany, et al.NAR Genomics and Bioinformatics|September 9, 2026
LAMBDA: a prophage detection benchmark for genomic language modelsLeAnn M Lindsey, Nicole L Pershing, Keith Dufault-Thompson, et al.NAR Genomics and Bioinformatics|September 10, 2026
Long-read based detection of large copy number variants with potential functional significance using the ContextSV structural variant callerJonathan Elliot Perdomo, Mian Umair Ahsan, Jasmine Akoto, et al.NAR Genomics and Bioinformatics|September 1, 2026
From rules to foundation models: a comprehensive review of machine learning approaches for siRNA designZahra Khodagholi, Niloofar YousefiNAR Genomics and Bioinformatics|September 16, 2026
Customizable host and viral transcript enrichment using CRISPR-Cas9 long-read sequencing for characterization of low-to-moderate abundance isoformsAn N T Nguyen, Jianshu Zhang, Shuxin Zhang, et al.NAR Genomics and Bioinformatics|September 4, 2026
Scalable joint non-negative matrix factorization for paired single cell gene expression and chromatin accessibility dataWilliam Morgans, Andrew D Sharrocks, Mudassar IqbalNAR Genomics and Bioinformatics|September 29, 2026
Characterization of immunoglobulin loci in Pongo abelii and Pongo pygmaeus: Insights from multi-genome annotation and IMGT-based curationShamsa Batool, Guilhem Zeitoun, Chahrazed Debbagh, et al.NAR Genomics and Bioinformatics|October 14, 2026
Data-Driven Virus Discovery with Virushunter and VirusgathererLiubov Chuprikova, Li Chuin Chong, Sergej Ruff, et al.NAR Genomics and Bioinformatics|October 15, 2026
Pan-cancer multi-omics analysis reveals upregulation of the POLE2 subunit of DNA polymerase epsilon and its associations with patient survival and cellular pathways beyond DNA replicationAlina Krasilia, Deepali Chaudhry, Iwona J Fijalkowska, et al.NAR Genomics and Bioinformatics|October 8, 2026
Detect de novo expressed ORFs in transcriptomes with DESwoMANAnna Grandchamp, Marie Lebherz, Elias DohmenPageof 102