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NAR Genomics and Bioinformatics|February 12, 2021
Rapid discovery of novel prophages using biological feature engineering and machine learningKimmo Sirén, Andrew Millard, Bent Petersen, et al.NAR Genomics and Bioinformatics|February 12, 2021
Computational deconvolution to estimate cell type-specific gene expression from bulk dataMaria K Jaakkola, Laura L EloNAR Genomics and Bioinformatics|April 28, 2025
ARTdeConv: adaptive regularized tri-factor non-negative matrix factorization for cell type deconvolutionTianyi Liu, Chuwen Liu, Quefeng Li, et al.NAR Genomics and Bioinformatics|April 28, 2025
GINClus: RNA structural motif clustering using graph isomorphism networkNabila Shahnaz Khan, Md Mahfuzur Rahaman, Shaojie ZhangNAR Genomics and Bioinformatics|April 23, 2025
Exploring the latent space of transcriptomic data with topic modelingFilippo Valle, Michele Caselle, Matteo OsellaNAR Genomics and Bioinformatics|May 2, 2025
XenoBug: machine learning-based tool to predict pollutant-degrading enzymes from environmental metagenomesAditya S Malwe, Usha Longwani, Vineet K SharmaNAR Genomics and Bioinformatics|March 31, 2025
Qarles: a web server for the quick characterization of large sets of genesCarles PonsNAR Genomics and Bioinformatics|May 28, 2025
Methyl-Micro-C: simultaneous characterization of chromatin accessibility, interactions, and DNA methylationLeonardo Gonzalez-Smith, Claire Stevens, Huan Cao, et al.NAR Genomics and Bioinformatics|May 20, 2025
DRBP-EDP: classification of DNA-binding proteins and RNA-binding proteins using ESM-2 and dual-path neural networkQiang Mu, Guoping Yu, Guomin Zhou, et al.NAR Genomics and Bioinformatics|May 20, 2025
dsRNAmax: a multi-target chimeric dsRNA designer for safe and effective crop protectionStephen J Fletcher, Jai Lawrence, Anne Sawyer, et al.Pageof 101