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NAR Genomics and Bioinformatics|May 20, 2025
CABO-16S-a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samplesEryn M Eitel, Daniel R Utter, Stephanie A Connon, et al.
NAR Genomics and Bioinformatics|May 22, 2025
Learning to utilize internal protein 3D nanoenvironment descriptors in predicting CRISPR-Cas9 off-target activityJeffrey Kelvin Mak, Artemi Bendandi, José Augusto Salim, et al.
NAR Genomics and Bioinformatics|July 9, 2025
Comparison of single-cell long-read and short-read transcriptome sequencing via cDNA molecule matching: quality evaluation of the MAS-ISO-seq approachNatalia Zajac, Qin Zhang, Anna Bratus-Neuenschwander, et al.
NAR Genomics and Bioinformatics|May 30, 2025
VariantFoldRNA: a flexible, containerized, and scalable pipeline for genome-wide riboSNitch predictionKobie J Kirven, Philip C Bevilacqua, Sarah M Assmann
NAR Genomics and Bioinformatics|May 9, 2025
Improving prediction of bacterial sRNA regulatory targets with expression dataYildiz Derinkok, Haiqi Wang, Brian Tjaden
NAR Genomics and Bioinformatics|April 28, 2025
Evaluating sequence and structural similarity metrics for predicting shared paralog functionsOlivier Dennler, Colm J Ryan
NAR Genomics and Bioinformatics|November 5, 2025
MntJULiP and Jutils: differential splicing analysis of RNA-seq data with covariatesWui Wang Lui, Guangyu Yang, Zitong He, et al.
NAR Genomics and Bioinformatics|September 29, 2025
Proteins need extra attention: improving the predictive power of protein language models on mutational datasets with hint tokensXinning Li, Ryann M Perez, Sam Giannakoulias, et al.
NAR Genomics and Bioinformatics|September 8, 2025
Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMAPhilip T L C Clausen, Malte B Hallgren, Søren Overballe-Petersen, et al.
NAR Genomics and Bioinformatics|September 8, 2025
A high-resolution meiotic crossover map from single-nucleus ATAC-seq reveals insights into the recombination landscape in mammalsStevan Novakovic, Caitlin Harris, Ruijie Liu, et al.
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