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Nature Computational Science|November 10, 2023
Denoising sparse microbial signals from single-cell sequencing of mammalian host tissuesBassel Ghaddar, Martin J Blaser, Subhajyoti DeNature Computational Science|August 28, 2023
Persistent spectral theory-guided protein engineeringYuchi Qiu, Guo-Wei WeiNature Computational Science|August 25, 2023
Interrogation of clonal tracking data using barcodetrackRDiego A Espinoza, Ryland D Mortlock, Samson J Koelle, et al.Nature Computational Science|December 27, 2021
Cell type-aware analysis of RNA-seq dataChong Jin, Mengjie Chen, Danyu Lin, et al.Nature Computational Science|August 29, 2025
MetaKSSD: boosting the scalability of the reference taxonomic marker database and the performance of metagenomic profiling using sketch operationsHuiguang Yi, Xiaoxin Lu, Qing ChangNature Computational Science|January 16, 2023
A flexible Bayesian framework for unbiased estimation of timescalesRoxana Zeraati, Tatiana A Engel, Anna LevinaNature Computational Science|March 28, 2026
HorusEye: a self-supervised foundation model for generalizable X-ray tomography restorationYuetan Chu, Longxi Zhou, Gongning Luo, et al.Nature Computational Science|June 2, 2026
The Open Materials 2024 (OMat24) inorganic materials dataset and modelsLuis Barros-Luque, Muhammed Shuaibi, Xiang Fu, et al.Nature Computational Science|November 20, 2023
A laboratory and simulation platform to integrate individual life history traits and population dynamicsAndrea Scharf, Josh Mitteldorf, Brinda Armstead, et al.Nature Computational Science|May 19, 2026
HELIX: a scalable model for predicting context-dependent regulation of RNA splicing and isoform usageZihan Zhou, Bingqi Wu, Xin Zheng, et al.Pageof 46