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Nature Methods|November 3, 2025
Whole-brain reconstruction of fiber tracts based on cytoarchitectonic organizationYue Zhang, Tao Song, Chao-Yu Yang, et al.Nature Methods|October 3, 2025
Spatiotemporal focusing enables all-optical in situ histology of heterogeneous tissueXiang Ji, Sincheng Huang, Beth Friedman, et al.Nature Methods|September 30, 2025
Highly multiplexed 3D profiling of cell states and immune niches in human tumorsClarence Yapp, Ajit J Nirmal, Felix Zhou, et al.Nature Methods|August 7, 2025
Ultra-high-scale cytometry-based cellular interaction mappingDominik Vonficht, Lea Jopp-Saile, Schayan Yousefian, et al.Nature Methods|September 8, 2025
Scvi-hub: an actionable repository for model-driven single-cell analysisCan Ergen, Valeh Valiollah Pour Amiri, Martin Kim, et al.Nature Methods|February 9, 2026
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogenyMartin Hunt, Angie S Hinrichs, Daniel Anderson, et al.Nature Methods|March 14, 2025
Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflowsSergio Marco Salas, Louis B Kuemmerle, Christoffer Mattsson-Langseth, et al.Nature Methods|March 14, 2025
A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell linesYing Chen, Nadia M Davidson, Yuk Kei Wan, et al.Nature Methods|March 14, 2025
Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usageKaty Börner, Philip D Blood, Jonathan C Silverstein, et al.Pageof 342