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Nature Methods|March 21, 2024
SpatialData: an open and universal data framework for spatial omicsLuca Marconato, Giovanni Palla, Kevin A Yamauchi, et al.Nature Methods|February 16, 2024
Tapioca: a platform for predicting de novo protein-protein interactions in dynamic contextsTavis J Reed, Matthew D Tyl, Alicja Tadych, et al.Nature Methods|February 19, 2024
Generation of complex bone marrow organoids from human induced pluripotent stem cellsStephanie Frenz-Wiessner, Savannah D Fairley, Maximilian Buser, et al.Nature Methods|February 19, 2024
SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domainsJavad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, et al.Nature Methods|February 19, 2024
Multimodal probing of T-cell recognition with hexapod heterostructuresXiaodan Huang, Lingyuan Meng, Guoshuai Cao, et al.Nature Methods|February 17, 2024
Toward universal cell embeddings: integrating single-cell RNA-seq datasets across species with SATURNYanay Rosen, Maria Brbić, Yusuf Roohani, et al.Nature Methods|January 31, 2024
Direct prediction of intrinsically disordered protein conformational properties from sequenceJeffrey M Lotthammer, Garrett M Ginell, Daniel Griffith, et al.Nature Methods|July 27, 2023
CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learningAlex Chklovski, Donovan H Parks, Ben J Woodcroft, et al.Nature Methods|March 21, 2026
LazySlide: accessible and interoperable whole-slide image analysisYimin Zheng, Ernesto Abila, Eva Chrenková, et al.Nature Methods|March 21, 2026
Open and sustainable AI: challenges, opportunities and the road ahead in the life sciencesGavin Farrell, Eleni Adamidi, Rafael Andrade Buono, et al.Pageof 342