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Nature Methods|July 10, 2025
De novo assembly and delivery of synthetic megabase-scale human DNA into mouse early embryosYue Liu, Jianting Zhou, Duo Liu, et al.Nature Methods|December 31, 2025
cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regionsEric Van Buren, Yi Zhang, Xihao Li, et al.Nature Methods|December 24, 2025
DynamicAtlas: a morphodynamic atlas for Drosophila developmentMatthew F Lefebvre, Vishank Jain-Sharma, Nikolas Claussen, et al.Nature Methods|December 23, 2025
Glutamate indicators with increased sensitivity and tailored deactivation ratesAbhi Aggarwal, Adrian Negrean, Yang Chen, et al.Nature Methods|December 17, 2025
Inferring cancer type-specific patterns of metastatic spread using MetientDivya Koyyalagunta, Karuna Ganesh, Quaid MorrisNature Methods|April 10, 2025
Computer vision for primate behavior analysis in the wildRichard Vogg, Timo Lüddecke, Jonathan Henrich, et al.Nature Methods|April 10, 2025
PTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocksFred Zhangzhi Peng, Chentong Wang, Tong Chen, et al.Nature Methods|April 22, 2025
Mapping effective connectivity by virtually perturbing a surrogate brainZixiang Luo, Kaining Peng, Zhichao Liang, et al.Nature Methods|May 1, 2025
ATLAS: a rationally designed anterograde transsynaptic tracerJacqueline F Rivera, Haoyang Huang, Weiguang Weng, et al.Nature Methods|April 22, 2025
TEMI: tissue-expansion mass-spectrometry imagingHua Zhang, Lang Ding, Amy Hu, et al.Pageof 337