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Nature Methods|July 25, 2024
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing dataMaria Carilli, Gennady Gorin, Yongin Choi, et al.Nature Methods|May 16, 2024
Indexing and searching petabase-scale nucleotide resourcesSergey A Shiryev, Richa AgarwalaNature Methods|June 25, 2024
Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source toolsDan Biderman, Matthew R Whiteway, Cole Hurwitz, et al.Nature Methods|June 17, 2024
Quantifying DNA replication speeds in single cells by scEdU-seqJeroen van den Berg, Vincent van Batenburg, Christoph Geisenberger, et al.Nature Methods|May 23, 2024
Dependency-aware deep generative models for multitasking analysis of spatial omics dataTian Tian, Jie Zhang, Xiang Lin, et al.Nature Methods|December 18, 2025
Methods to analyze cell migration data: fundamentals and practical guidelinesPei-Hsun Wu, Jude M Phillip, Wenxuan Du, et al.Nature Methods|December 19, 2025
Cell context-dependent in silico organelle localization in label-free microscopy imagesNitsan Elmalam, Assaf ZaritskyNature Methods|December 22, 2025
A fully automated benchmarking suite to compare macromolecular complexesGabriel Studer, Xavier Robin, Stefan Bienert, et al.Nature Methods|December 17, 2025
High-parameter spatial multi-omics through histology-anchored integrationYonghao Liu, Chuyao Wang, Zhikang Wang, et al.Nature Methods|November 26, 2025
A highly photostable monomeric red fluorescent protein for dual-color 3D STED and time-lapse 3D SIM imagingYa Ding, Wenting He, Kunhao Wang, et al.Pageof 344