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Nature Methods|October 31, 2025
Nicheformer: a foundation model for single-cell and spatial omicsAlejandro Tejada-Lapuerta, Anna C Schaar, Robert Gutgesell, et al.Nature Methods|October 20, 2025
CELLECT: contrastive embedding learning for large-scale efficient cell trackingHongyu Zhou, Seonghoon Kim, Zhifeng Zhao, et al.Nature Methods|October 15, 2025
gReLU: a comprehensive framework for DNA sequence modeling and designAvantika Lal, Laura Gunsalus, Surag Nair, et al.Nature Methods|October 8, 2025
Automated classification of cellular expression in multiplexed imaging data with NimbusJosef Lorenz Rumberger, Noah F Greenwald, Jolene S Ranek, et al.Nature Methods|October 1, 2025
Fourier-based three-dimensional multistage transformer for aberration correction in multicellular specimensThayer Alshaabi, Daniel E Milkie, Gaoxiang Liu, et al.Nature Methods|October 23, 2019
A super-resolution platform for correlative live single-molecule imaging and STED microscopyV V G Krishna Inavalli, Martin O Lenz, Corey Butler, et al.Nature Methods|October 27, 2019
Author Correction: A genetically encodable cell-type-specific protein synthesis inhibitorMaximilian Heumüller, Caspar Glock, Vidhya Rangaraju, et al.Nature Methods|April 22, 2020
Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell typesSripriya Ravindra Kumar, Timothy F Miles, Xinhong Chen, et al.Nature Methods|April 15, 2020
Meltome atlas-thermal proteome stability across the tree of lifeAnna Jarzab, Nils Kurzawa, Thomas Hopf, et al.Nature Methods|September 19, 2025
GPU-accelerated homology search with MMseqs2Felix Kallenborn, Alejandro Chacon, Christian Hundt, et al.Pageof 339