Diogo Borges Lima

8PUBLICATIONS
20CO-AUTHORS
Analytical spectrometryProteomics and metabolomicsFormal methods for softwarePattern recognitionMicrobial genetics
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Publications (8)

|Aug 27, 2025
AIRPred: A Deep Learning Model Predictor for Peptide Intensity Ratios in Cross-Linking Mass Spectrometry Improves Cross-Link Spectrum Matching.

Zehong Zhang, Mei Wu, Max Ruwolt

|Nov 01, 2024
Proteome-scale recombinant standards and a robust high-speed search engine to advance cross-linking MS-based interactomics.

Milan Avila Clasen, Max Ruwolt, Cong Wang

|Feb 01, 2024
RawVegetable 2.0: Refining XL-MS Data Acquisition through Enhanced Quality Control.

Louise Ulrich Kurt, Milan Avila Clasen, Ísis Venturi Biembengut

|Mar 22, 2023
PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification.

Milan A Clasen, Marlon D M Santos, Louise Ulrich Kurt

|Sep 21, 2022
Increasing confidence in proteomic spectral deconvolution through mass defect.

Milan A Clasen, Louise U Kurt, Marlon D M Santos

|Nov 18, 2021
TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics.

Jonathan Dhenin, Diogo Borges Lima, Mathieu Dupré

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Frequent Collaborators

5 joint publications

Paulo Costa Carvalho

4 joint publications

Fan Liu

3 joint publications

Milan Avila Clasen

3 joint publications

Marlon Dias Mariano Santos