Stephen Schaffner
25PUBLICATIONS
357CO-AUTHORS
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Publications (25)
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|Apr 16, 2025
Towards an open analysis ecosystem for <i>Plasmodium</i> genomic epidemiology.Shazia Ruybal-Pesántez, Jorge Amaya-Romero, Sophie Bérubé
|Apr 08, 2025
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale.Ivan Specht, Gage K Moreno, Taylor Brock-Fisher
|Mar 17, 2025
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale.Ivan Specht, Gage K Moreno, Taylor Brock-Fisher
|Dec 14, 2024
Polyphonia: detecting inter-sample contamination in viral genomic sequencing data.Lydia A Krasilnikova, Christopher H Tomkins-Tinch, Alton C Gayton
|Nov 23, 2024
MalKinID: A classification model for identifying malaria parasite genealogical relationships using identity-by-descent.Wesley Wong, Lea Wang, Stephen F Schaffner
|Feb 07, 2024
Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever.Dylan Kotliar, Siddharth Raju, Shervin Tabrizi
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Frequent Collaborators
14 joint publications
Danny Park
13 joint publications
Pardis C Sabeti
11 joint publications
Bronwyn McInnis
10 joint publications
Katherine Siddle
5 joint publications
Onikepe A Folarin
4 joint publications
Nnennaya A Ajayi
4 joint publications
Oguzie Judith
4 joint publications
Lawrence C Madoff
4 joint publications
Lydia A Krasilnikova
4 joint publications
Meagan Burns
