Robbin Bouwmeester

27PUBLICATIONS
103CO-AUTHORS
Proteomics and metabolomicsSoftware quality, processes and metricsDeep learningEpigenetics (incl. genome methylation and epigenomics)Adversarial machine learning
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Publications (27)

|Nov 03, 2026
Limitations of de novo peptide sequencing in resolving sequence ambiguity.

|Jul 14, 2026
Instrument-Software Synergy in Proteomics: Systematic Evaluation across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods.

|Jun 08, 2026
iDeepLC: Chemical Structure Information Yields Improved Retention Time Prediction of Peptides with Unseen Modifications.

|Feb 10, 2026
Transfer learning in DeepLC improves LC retention time prediction across substantially different modifications and setups.

Robbin Bouwmeester, Alireza Nameni, Arthur Declercq

|Jan 22, 2026
The Escherichia coli PeptideAtlas Build: Characterizing the Observed Escherichia coli Pan-Proteome and Its Post-Translational Modifications.

Caroline Jachmann, Zhi Sun, Kevin Velghe

|Nov 11, 2025
Koina: Democratizing machine learning for proteomics research.

Ludwig Lautenbacher, Kevin L Yang, Tobias Kockmann

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Frequent Collaborators

19 joint publications

Lennart Martens

16 joint publications

Ralf Gabriels

7 joint publications

Robbe Devreese

7 joint publications

Arthur Declercq