Ameya Harmalkar
7PUBLICATIONS
42CO-AUTHORS
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Publications (7)
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|Sep 22, 2025
Docking With Rosetta and Deep Learning Approaches in CAPRI Rounds 47-55.Ameya Harmalkar, Lee-Shin Chu, Samuel W Canner
|May 27, 2025
Reliable protein-protein docking with AlphaFold, Rosetta, and replica exchange.Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray
|Jul 19, 2024
Advancing membrane-associated protein docking with improved sampling and scoring in Rosetta.Rituparna Samanta, Ameya Harmalkar, Priyamvada Prathima
|Aug 07, 2023
Reliable protein-protein docking with AlphaFold, Rosetta, and replica-exchange.Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray
|Jan 22, 2023
Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features.Ameya Harmalkar, Roshan Rao, Yuxuan Richard Xie
|Jun 03, 2022
Induced fit with replica exchange improves protein complex structure prediction.Ameya Harmalkar, Sai Pooja Mahajan, Jeffrey J Gray
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Frequent Collaborators
7 joint publications
Jeffrey J Gray
2 joint publications
Sergey Lyskov
2 joint publications
Rituparna Samanta
1 joint publications
Julia Koehler Leman
1 joint publications
Jared Adolf-Bryfogle
1 joint publications
Kyle Barlow
1 joint publications
Ziv Ben-Aharon
1 joint publications
Daniel Farrell
1 joint publications
Fatima Hitawala
1 joint publications
Jeliazko Jeliazkov
