Dong Si

11PUBLICATIONS
83CO-AUTHORS
Architectural computing and visualisation methodsGenomics and transcriptomicsBioinformatic methods developmentStructure and dynamics of materialsData models, storage and indexing
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Publications (11)

|Aug 13, 2026
ContrastQA: A label-guided graph contrastive learning-based approach for protein complex structure quality assessment.

|Feb 23, 2026
A Large-Scale Cryo-EM RNA Motif Dataset and Benchmark for Machine Learning-Based Structure Modeling.

Chandramathi Murugadass, Hajira Rana, Brent M Znosko

|Jun 25, 2024
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge.

Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie

|Feb 12, 2024
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.

Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie

|Jan 22, 2023
Fast and automated protein-DNA/RNA macromolecular complex modeling from cryo-EM maps.

Andrew Nakamura, Hanze Meng, Minglei Zhao

|Sep 28, 2022
Neural representations of cryo-EM maps and a graph-based interpretation.

Nathan Ranno, Dong Si

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Frequent Collaborators

5 joint publications

Jie Hou

5 joint publications

Renzhi Cao

3 joint publications

Catherine L Lawson

3 joint publications

Andriy Kryshtafovych