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Luis Rueda

8PUBLICATIONS
8CO-AUTHORS
Deep learningProteins and peptidesBiological network analysisPredictive and prognostic markersGenomics and transcriptomics
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Publications (8)

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|Feb 11, 2026
A survey of contrastive learning methods in molecular representation.

Ali Forooghi, Shaghayegh Sadeghi, Luis Rueda

|Oct 29, 2025
PPISHES-an enhanced physicochemical approach for predicting protein interaction sites using graph neural networks.

Darpan Khanna, Abdullah Abdul Sattar Shaikh, Luis Rueda

|Apr 12, 2024
SEGCECO: Subgraph Embedding of Gene expression matrix for prediction of CEll-cell COmmunication.

Akram Vasighizaker, Sheena Hora, Raymond Zeng

|May 26, 2023
A Fecal-Microbial-Extracellular-Vesicles-Based Metabolomics Machine Learning Framework and Biomarker Discovery for Predicting Colorectal Cancer Patients.

Fatma Hilal Yagin, Abedalrhman Alkhateeb, Cemil Colak

|Mar 29, 2023
Cell Type Annotation Model Selection: General-Purpose vs. Pattern-Aware Feature Gene Selection in Single-Cell RNA-Seq Data.

Akram Vasighizaker, Yash Trivedi, Luis Rueda

|Apr 21, 2022
Computationally repurposing drugs for breast cancer subtypes using a network-based approach.

Forough Firoozbakht, Iman Rezaeian, Luis Rueda

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Frequent Collaborators

3 joint publications

Abedalrhman Alkhateeb

2 joint publications

Akram Vasighizaker

1 joint publications

Nallasivam Palanisamy

1 joint publications

Fatma Hilal Yagin

1 joint publications

Cemil Colak

1 joint publications

Mohammad Azzeh

1 joint publications

Ali Forooghi

1 joint publications

Shaghayegh Sadeghi

Frequent Collaborators

3 joint publications

Abedalrhman Alkhateeb

2 joint publications

Akram Vasighizaker

1 joint publications

Nallasivam Palanisamy

1 joint publications

Fatma Hilal Yagin

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