Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Yuma Handa

3PUBLICATIONS

15CO-AUTHORS

Molecular medicineBiomolecular modelling and designProteins and peptides

Featured researcher

Get your video featured.

Publish with JoVE

Featured researcher

Get your video featured.

Publish with JoVE

Publications (3)

Sort by Publication Date:

|Dec 22, 2025

Dynamical Fragment Molecular Orbital Interaction Analysis of SARS-CoV‑2 RNA-Dependent RNA Polymerase and Remdesivir.

Shuhei Miyakawa, Koji Okuwaki, Yusuke Kawashima

|Mar 04, 2024

Prediction of Binding Pose and Affinity of Nelfinavir, a SARS-CoV-2 Main Protease Repositioned Drug, by Combining Docking, Molecular Dynamics, and Fragment Molecular Orbital Calculations.

Yuma Handa, Koji Okuwaki, Yusuke Kawashima

|Sep 10, 2021

Special Features of COVID-19 in the FMODB: Fragment Molecular Orbital Calculations and Interaction Energy Analysis of SARS-CoV-2-Related Proteins.

Kaori Fukuzawa, Koichiro Kato, Chiduru Watanabe

Pageof 1

Frequent Collaborators

3 joint publications

Kaori Fukuzawa

3 joint publications

Yusuke Kawashima

2 joint publications

Koichiro Kato

2 joint publications

Teruki Honma

2 joint publications

Etsuo Yonemochi

2 joint publications

Takayuki Furuishi

1 joint publications

Koji Okuwaki

1 joint publications

Kazuki Watanabe

1 joint publications

Tatsuya Ohyama

1 joint publications

Kikuko Kamisaka

Frequent Collaborators

3 joint publications

Kaori Fukuzawa

3 joint publications

Yusuke Kawashima

2 joint publications

Koichiro Kato

2 joint publications

Teruki Honma

Top Related Videos

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing <em>In Vitro</em> and in Cells

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing <em>In Vitro</em> and in Cells

Published on : Dec 09, 2022

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors

Published on : May 09, 2025

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro

Published on : Sep 26, 2025

See more related videos

Top Related Videos

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing <em>In Vitro</em> and in Cells

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing <em>In Vitro</em> and in Cells

Published on : Dec 09, 2022

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors

Published on : May 09, 2025

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro

Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro

Published on : Sep 26, 2025

See more related videos