Search research articles

ABOUT JoVE

Overview Leadership Blog JoVE Help Center

AUTHORS

Publishing Process Editorial Board Scope & Policies Peer Review FAQ Submit

LIBRARIANS

Testimonials Subscriptions Access Resources Library Advisory Board FAQ

RESEARCH

JoVE Journal Methods Collections JoVE Encyclopedia of Experiments Archive

EDUCATION

JoVE Core JoVE Business JoVE Science Education JoVE Lab Manual Faculty Resource Center Faculty Site

Terms & Conditions of Use

Alexandre Almeida

12PUBLICATIONS

46CO-AUTHORS

Medical infection agents (incl. prions)Host-parasite interactionsVirologyGene expression (incl. microarray and other genome-wide approaches)Genome structure and regulation

Featured researcher

Get your video featured.

Publish with JoVE

Featured researcher

Get your video featured.

Publish with JoVE

Publications (12)

Sort by Publication Date:

|Nov 12, 2025

Integration of metagenome-assembled genomes with clinical isolates expands the genomic landscape of gut-associated Klebsiella pneumoniae.

Samriddhi Gupta, Alexandre Almeida

|Jul 17, 2025

Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria.

Carlos Serna, Bosco R Matamoros, Mario Pulido-Vadillo

|Jan 10, 2025

Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations.

Qi Yin, Ana C da Silva, Francisco Zorrilla

|Feb 29, 2024

A metagenomic catalog of the early-life human gut virome.

Shuqin Zeng, Alexandre Almeida, Shiping Li

|Sep 01, 2022

A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome.

Shuqin Zeng, Dhrati Patangia, Alexandre Almeida

|Jan 11, 2022

Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome.

Cynthia Maria Chibani, Alexander Mahnert, Guillaume Borrel

Pageof 2

Frequent Collaborators

6 joint publications

Robert D Finn

2 joint publications

Simonetta Gribaldo

2 joint publications

Ruth A Schmitz

2 joint publications

Shaopu Wang

2 joint publications

Jean-François Brugère

2 joint publications

Dezhi Mu

2 joint publications

Christine Moissl-Eichinger

2 joint publications

Guillaume Borrel

2 joint publications

Alexander Mahnert

1 joint publications

Bruno Gonzalez-Zorn

Frequent Collaborators

6 joint publications

Robert D Finn

2 joint publications

Simonetta Gribaldo

2 joint publications

Ruth A Schmitz

2 joint publications

Shaopu Wang

Top Related Videos

Generating Whole Bacterial Genomes from Clinical Samples using a Target Enrichment Workflow

Generating Whole Bacterial Genomes from Clinical Samples using a Target Enrichment Workflow

Published on : Aug 15, 2025

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes

Published on : Mar 03, 2023

Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems

Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems

Published on : Aug 23, 2019

See more related videos

Top Related Videos

Generating Whole Bacterial Genomes from Clinical Samples using a Target Enrichment Workflow

Generating Whole Bacterial Genomes from Clinical Samples using a Target Enrichment Workflow

Published on : Aug 15, 2025

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes

Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes

Published on : Mar 03, 2023

Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems

Analysis of Interactions between Endobiotics and Human Gut Microbiota Using In Vitro Bath Fermentation Systems

Published on : Aug 23, 2019

See more related videos