Pedro Ojeda-May

5PUBLICATIONS
13CO-AUTHORS
Sequence analysisChemical thermodynamics and energeticsComputational chemistryCell physiologyFormal methods for software
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Publications (5)

|Oct 24, 2025
IsoformMapper: a web application for protein-level comparison of splice variants through structural community analysis.

Alexander Vergara, Tamara Hernández-Verdeja, Pedro Ojeda-May

|Dec 23, 2023
Dramatic Differences between the Structural Susceptibility of the S1 Pre- and S2 Postfusion States of the SARS-CoV-2 Spike Protein to External Electric Fields Revealed by Molecular Dynamics Simulations.

Alexander Lipskij, Claudia Arbeitman, Pablo Rojas

|Jul 20, 2021
Reaction Path-Force Matching in Collective Variables: Determining Ab Initio QM/MM Free Energy Profiles by Fitting Mean Force.

Bryant Kim, Ryan Snyder, Mulpuri Nagaraju

|Oct 19, 2018
Mapping Free Energy Pathways for ATP Hydrolysis in the E. coli ABC Transporter HlyB by the String Method.

Yan Zhou, Pedro Ojeda-May, Mulpuri Nagaraju

|Jun 20, 2017
Acceleration of Semiempirical QM/MM Methods through Message Passage Interface (MPI), Hybrid MPI/Open Multiprocessing, and Self-Consistent Field Accelerator Implementations.

Pedro Ojeda-May, Kwangho Nam

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Frequent Collaborators

2 joint publications

Jingzhi Pu

1 joint publications

Kwangho Nam

1 joint publications

Mulpuri Nagaraju

1 joint publications

Bryant Kim