J J Emerson

16PUBLICATIONS
52CO-AUTHORS
Phylogeny and comparative analysisGenome structure and regulationGenomics and transcriptomicsEvolution of developmental systemsEpigenetics (incl. genome methylation and epigenomics)
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Publications (16)

|Apr 17, 2026
Leveraging long-read assemblies and machine learning to enhance short-read transposable element detection and genotyping.

|Jul 16, 2025
Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome.

Harsh G Shukla, Mahul Chakraborty, J J Emerson

|Feb 24, 2025
Leveraging long-read assemblies and machine learning to enhance short-read transposable element detection and genotyping.

Austin Daigle, Logan S Whitehouse, Roy Zhao

|Feb 20, 2025
Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline.

Ming Hu, Penglong Wan, Chengjie Chen

|Jan 28, 2025
Functional innovation through new genes as a general evolutionary process.

Shengqian Xia, Jianhai Chen, Deanna Arsala

|Dec 18, 2024
The three-dimensional genome drives the evolution of asymmetric gene duplicates via enhancer capture-divergence.

UnJin Lee, Deanna Arsala, Shengqian Xia

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Frequent Collaborators

8 joint publications

Mahul Chakraborty

3 joint publications

Manyuan Long

3 joint publications

Jianhai Chen

2 joint publications

Edwin Solares