Nilah M Ioannidis

11PUBLICATIONS

28CO-AUTHORS

Neural networksStatistical and quantitative geneticsGene expression (incl. microarray and other genome-wide approaches)Epigenetics (incl. genome methylation and epigenomics)Genomics and transcriptomics

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Publications (11)

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|Oct 01, 2026

Extracting interpretable single-cell metabolic states with graph-guided representation learning.

|Aug 24, 2026

GUANinE v1.1 reveals complementarity of supervised and genomic language models.

|Aug 21, 2026

Base-pair resolution conservation data improves cell type specific sequence-to-expression prediction.

|Nov 24, 2025

Integrated analysis of multimodal long-read epigenetic assays.

Jeremy Marcus, Oberon Dixon-Luinenburg, Nathan Gamarra

|Mar 21, 2025

Critical assessment of missense variant effect predictors on disease-relevant variant data.

Ruchir Rastogi, Ryan Chung, Sindy Li

|Sep 10, 2024

Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function.

Gabriel B Loeb, Pooja Kathail, Richard W Shuai

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Frequent Collaborators

Eyes S Robson

Ruchir Rastogi

Gabriel B Loeb

Ryo Yamamoto

Peter H Sudmant

Pooja Kathail

Volkan Sevim

Scot Federman

Alexander R Gupta

Chun Jimmie Ye

Frequent Collaborators

Eyes S Robson

Ruchir Rastogi

Gabriel B Loeb

Ryo Yamamoto