Aidong Zhang

8PUBLICATIONS
20CO-AUTHORS
Software quality, processes and metricsBioinformatic methods developmentGene expression (incl. microarray and other genome-wide approaches)Semi- and unsupervised learningSequence analysis
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Publications (8)

|Nov 24, 2025
Atacformer: A transformer-based foundation model for analysis and interpretation of ATAC-seq data.

Nathan J LeRoy, Guangtao Zheng, Oleksandr Khoroshevskyi

|Oct 28, 2025
ConceptDrift: leveraging spatial, temporal and semantic evolution of biomedical concepts for hypothesis generation.

Amir Hassan Shariatmadari, Alireza Jafari, Sikun Guo

|Aug 24, 2024
Methods for constructing and evaluating consensus genomic interval sets.

Julia Rymuza, Yuchen Sun, Guangtao Zheng

|Aug 12, 2024
Methods for evaluating unsupervised vector representations of genomic regions.

Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi

|Jul 08, 2024
Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings.

Nathan J LeRoy, Jason P Smith, Guangtao Zheng

|Jul 01, 2024
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data.

Guangzhi Xiong, Nathan J LeRoy, Stefan Bekiranov

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Frequent Collaborators

7 joint publications

Nathan C Sheffield

6 joint publications

Nathan J LeRoy

5 joint publications

Guangtao Zheng

3 joint publications

Erfaneh Gharavi