Yuji Sugita

70PUBLICATIONS
155CO-AUTHORS
OptimisationComputational chemistryBioinformatic methods developmentInstruments and techniquesTheory and design of materials
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Publications (70)

|Sep 18, 2026
Optimized M-SHAKE Constraint Implementations for GPU-Accelerated Molecular Dynamics: Balancing Precision and Performance Across Architectures.

|Sep 17, 2025
CGBack: Diffusion Model for Backmapping Large-Scale and Complex Coarse-Grained Molecular Systems.

Diego Ugarte La Torre, Yuji Sugita

|Sep 04, 2025
An Empirical Biasing Force Constant to Minimize Overfitting in Cryo-EM Flexible Fitting Refinement.

Daisuke Matsuoka, Yuji Sugita, Takaharu Mori

|Aug 12, 2025
The distortion-push mechanism for the γ subunit rotation in F1-ATPase.

Masahiro Motohashi, Mao Oide, Chigusa Kobayashi

|May 05, 2025
ColBuilder: flexible structure generation of crosslinked collagen fibrils.

Debora Monego, Matthias Brosz, Johanna Buck

|Apr 02, 2025
High-performance QM/MM Enhanced Sampling Molecular Dynamics Simulations with GENESIS SPDYN and QSimulate-QM.

Kiyoshi Yagi, Klaas Gunst, Toru Shiozaki

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Frequent Collaborators

15 joint publications

Jaewoon Jung

13 joint publications

Chigusa Kobayashi

11 joint publications

Kiyoshi Yagi

8 joint publications

Hiraku Oshima