Daniel Weindl

12PUBLICATIONS
92CO-AUTHORS
Translational and applied bioinformaticsFormal methods for softwareProteomics and metabolomicsStochastic analysis and modellingStructural biology (incl. macromolecular modelling)
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Publications (12)

|Aug 13, 2026
The parameter estimation tables (PEtab) format version 2.

|Mar 06, 2026
PEtab-GUI: a graphical user interface to create, edit, and inspect PEtab parameter estimation problems.

Paul J Jost, Frank T Bergmann, Daniel Weindl

|Dec 04, 2025
C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels.

Daniel T Haas, Daniel Weindl, Pamela Kakimoto

|Oct 23, 2024
Benchmarking methods for computing local sensitivities in ordinary differential equation models at dynamic and steady states.

Polina Lakrisenko, Dilan Pathirana, Daniel Weindl

|Jan 08, 2024
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells.

Paul F Lang, David R Penas, Julio R Banga

|Nov 23, 2023
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.

Yannik Schälte, Fabian Fröhlich, Paul J Jost

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Frequent Collaborators

9 joint publications

Jan Hasenauer

4 joint publications

Leonard Schmiester

4 joint publications

Frank T Bergmann

3 joint publications

Polina Lakrisenko