Carl Kingsford

15PUBLICATIONS
10CO-AUTHORS
Sequence analysisAdversarial machine learningTranslational and applied bioinformaticsEvolutionary computationArtificial life and complex adaptive systems
Featured researcher

Get your video featured.

JoVEPublish with JoVE
Journal

Publications (15)

|Jul 07, 2026
seq2ribo: structure-aware integration of machine learning and simulation to predict ribosome location profiles from RNA sequences.

|Feb 23, 2026
Augmenting Electronic Health Records for Adverse Event Detection.

Gün Kaynar, Zhaoyi You, Richard D Boyce

|Feb 23, 2026
seq2ribo: Structure-aware integration of machine learning and simulation to predict ribosome location profiles from RNA sequences.

Gun Kaynar, Carl Kingsford

|Feb 23, 2026
CodonRL: Multi-Objective Codon Sequence Optimization Using Demonstration-Guided Reinforcement Learning.

Shiyi Du, Gün Kaynar, Jiayi Li

|Sep 02, 2025
ARCADE: Controllable Codon Design from Foundation Models via Activation Engineering.

Jiayi Li, Hong-Sheng Lai, Litian Liang

|Nov 18, 2024
Data-driven AI system for learning how to run transcript assemblers.

Yihang Shen, Zhiwen Yan, Carl Kingsford

Pageof 3

Frequent Collaborators

4 joint publications

Gün Kaynar

2 joint publications

Haotian Teng

2 joint publications

Ziv Bar-Joseph

2 joint publications

Jiayi Li