Joanna Sarzynska

8PUBLICATIONS
82CO-AUTHORS
Bioinformatic methods developmentBiomolecular modelling and designGroundwater quality processes and contaminated land assessmentGlycoconjugatesArchitectural design
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Publications (8)

|Dec 02, 2024
RNA-Puzzles Round V: blind predictions of 23 RNA structures.

Fan Bu, Yagoub Adam, Ryszard W Adamiak

|Dec 13, 2023
Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes.

Nivedita Dutta, Joanna Sarzynska, Indrajit Deb

|Sep 09, 2022
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.

Julita Gumna, Maciej Antczak, Ryszard W Adamiak

|Mar 26, 2022
Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives.

Nivedita Dutta, Indrajit Deb, Joanna Sarzynska

|Feb 01, 2022
LNA-induced dynamic stability in a therapeutic aptamer: insights from molecular dynamics simulations.

Rupak Pal, Indrajit Deb, Joanna Sarzynska

|Sep 24, 2020
The origin of the high stability of 3'-terminal uridine tetrads: contributions of hydrogen bonding, stacking interactions, and steric factors evaluated using modified oligonucleotide analogs.

Witold Andrałojć, Karol Pasternak, Joanna Sarzyńska

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Frequent Collaborators

4 joint publications

Zhichao Miao

4 joint publications

Maciej Antczak

4 joint publications

Janusz M Bujnicki

3 joint publications

Ryszard W Adamiak