Si Zhang

7PUBLICATIONS
9CO-AUTHORS
Biomolecular modelling and designEvolutionary computationBioinformatic methods developmentComputational chemistryMedical biochemistry - proteins and peptides (incl. medical proteomics)
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Publications (7)

|Jun 04, 2026
AE-PocketMiner Uses Attention to Simultaneously Predict Cryptic Pockets and Their Allosteric Coupling.

|Apr 07, 2026
How Well Can AI and Physics-Based Simulations Predict the Probability a Cryptic Pocket Is Open?

Si Zhang, Justin J Miller, Gregory R Bowman

|Feb 06, 2026
How Well Can AI and Physics-Based Simulations Predict the Probability a Cryptic Pocket Is Open?

Si Zhang, Justin J Miller, Gregory R Bowman

|Aug 16, 2025
Massively Parallel Free Energy Calculations for In Silico Affinity Maturation of Designed Miniproteins.

Dylan Novack, Si Zhang, Vincent A Voelz

|Jun 03, 2025
Simple Method to Optimize the Spacing and Number of Alchemical Intermediates in Expanded Ensemble Free Energy Calculations.

Dylan Novack, Robert M Raddi, Si Zhang

|Nov 07, 2024
Improved Estimates of Folding Stabilities and Kinetics with Multiensemble Markov Models.

Si Zhang, Yunhui Ge, Vincent A Voelz

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Frequent Collaborators

4 joint publications

Vincent A Voelz

3 joint publications

Dylan Novack

3 joint publications

Gregory R Bowman

2 joint publications

Justin J Miller