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Heejung Shim

8PUBLICATIONS

18CO-AUTHORS

Gene expression (incl. microarray and other genome-wide approaches)Medical infection agents (incl. prions)Genomics and transcriptomicsAccessible computingNonlinear optics and spectroscopy

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Publications (8)

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|Nov 26, 2025

Denoising image-based spatial transcriptomics data with DenoIST.

Aaron Wing Cheung Kwok, Annika Vannan, Nicholas E Banovich

|Oct 03, 2025

simPIC:flexible simulation of paired-insertion counts for single-cell ATAC sequencing data.

Sagrika Chugh, Heejung Shim, Davis J McCarthy

|Dec 23, 2024

Going beyond cell clustering and feature aggregation: Is there single cell level information in single-cell ATAC-seq data?

Aaron Wing Cheung Kwok, Heejung Shim, Davis J McCarthy

|Nov 21, 2023

A paradoxical population structure of <i>var</i> DBLα types in Africa.

Mun Hua Tan, Kathryn E Tiedje, Qian Feng

|Aug 07, 2023

sccomp: Robust differential composition and variability analysis for single-cell data.

Stefano Mangiola, Alexandra J Roth-Schulze, Marie Trussart

|Sep 15, 2022

sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.

Ruqian Lyu, Vanessa Tsui, Wayne Crismani

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Frequent Collaborators

4 joint publications

Davis J McCarthy

2 joint publications

Qian Feng

2 joint publications

Aaron Wing Cheung Kwok

1 joint publications

Shazia Ruybal-Pesántez

1 joint publications

Michael B Clark

1 joint publications

Ruqian Lyu

1 joint publications

Wayne Crismani

1 joint publications

Stefano Mangiola

1 joint publications

Alexandra J Roth-Schulze

1 joint publications

Alan F Rubin

Frequent Collaborators

4 joint publications

Davis J McCarthy

2 joint publications

Qian Feng

2 joint publications

Aaron Wing Cheung Kwok

1 joint publications

Shazia Ruybal-Pesántez

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